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deoxynucleotide dntp solution mix  (New England Biolabs)


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    Structured Review

    New England Biolabs deoxynucleotide dntp solution mix
    Deoxynucleotide Dntp Solution Mix, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 2099 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dntp/Deoxynucleotide+(dNTP)+Solution+Mix/pmc13010419-9-0-5
    Average 99 stars, based on 2099 article reviews
    deoxynucleotide dntp solution mix - by Bioz Stars, 2026-10
    99/100 stars

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    Related Articles

    Polymerase Chain Reaction:

    Article Title: Distribution characteristics of ABO subgroups and identification of novel alleles among volunteer non-remunerated blood donors in Ningxia, China.
    Article Snippet: Funding information Scientific Research Project of Ningxia Health System, Grant/Award Number: 2022-NWKY-040 Abstract Background and Objectives: To characterize and analyse 57 ABO subgroup samples from volunteer non-remunerated blood donors in Ningxia, China, and elucidate the distribution profile of ABO subgroups in this region.. Materials and Methods: Routine ABO serological testing was performed on 568,286 blood donors from 2014 to 2024.. Fifty-seven samples exhibiting forward/reverse typing discrepancies underwent full-length ABO gene sequencing using thirdgeneration single-molecule sequencing technology.

    Synthesized:

    Article Title: Elevational shifts in diazotrophic communities in subalpine forests: joint effects of temperature and soil properties
    Article Snippet: Soil diazotrophs introduce significant amounts of new nitrogen (N) into forest ecosystems through the process of free-living N fixation.. However, the factors influencing their community structure and function remain elusive, particularly in subalpine forests that are often characterized by N limitation.. Here, we explored the patterns and drivers of the diazotrophic community structure (abundance, diversity, composition, and inter-specific interactions) and N fixation potential (nifH mRNA copy number) along a 400-m elevational gradient in subalpine forests on the eastern edge of Tibetan Plateau, using droplet digital PCR, nifH gene sequencing, and metagenomic sequencing.

    Article Title: Regulation of YAP activity by nuclear G-actin binding.
    Article Snippet: .. RNA and primer were denatured in a 10 μL reaction with 1 μg total RNA, 2 μL Oligo d(T)23 VN (New England Biolabs, S1327S), 1 μL 10 mM dNTP (New England Biolabs, N0447S) for 5 min a h o D E T P w c 1 e c p C s p C q b t t i f S S T t u o o N h u T s g o i b m 1 a a c ( e t r w 8 t i s t m 2 t a w D ow nloaded from https://academ ic.oup.com /nar/article/54/6/gkag248/8528807 by guest on 22 M arch 2026 t 65 ◦C, then cDNA synthesis was synthesized at 42 ◦C for 1 after adding 2.8 μL Nuclease-free H 2 O (New England Bilabs, B1500L), 4 μL 5X ProtoScript II Buffer, 2 μL 0.1M TT (Roth, 6908.1), 0.2 μL RNase Inhibitor (40 U/ μl) (New ngland Biolabs, M0307S) and 1 μL ProtoScript ® II Reverse ranscriptase (New England Biolabs, M0368L). .. Quantitative CR (qPCR) for gene expression and CHIP-qPCR analysis as performed in a 20- μl reaction mixture containing 2 μl DNA or recovered DNA from CHIP, 200 nM primers, and 0 μl GoTaq ® qPCR Master Mix (2X) (Promega, A6002).

    Article Title: Regulation of YAP activity by nuclear G-actin binding
    Article Snippet: .. RNA and primer were denatured in a 10 μL reaction with 1 μg total RNA, 2 μL Oligo d(T)23 VN (New England Biolabs, S1327S), 1 μL 10 mM dNTP (New England Biolabs, N0447S) for 5 min at 65°C, then cDNA synthesis was synthesized at 42°C for 1 h after adding 2.8 μL Nuclease-free H 2 O (New England Biolabs, B1500L), 4 μL 5X ProtoScript II Buffer, 2 μL 0.1M DTT (Roth, 6908.1), 0.2 μL RNase Inhibitor (40 U/μl) (New England Biolabs, M0307S) and 1 μL ProtoScript® II Reverse Transcriptase (New England Biolabs, M0368L). .. Quantitative PCR (qPCR) for gene expression and CHIP-qPCR analysis was performed in a 20-μl reaction mixture containing 2 μl cDNA or recovered DNA from CHIP, 200 nM primers, and 10 μl GoTaq® qPCR Master Mix (2X) (Promega, A6002).

    Reverse Transcription:

    Article Title: Elevational shifts in diazotrophic communities in subalpine forests: joint effects of temperature and soil properties
    Article Snippet: Soil diazotrophs introduce significant amounts of new nitrogen (N) into forest ecosystems through the process of free-living N fixation.. However, the factors influencing their community structure and function remain elusive, particularly in subalpine forests that are often characterized by N limitation.. Here, we explored the patterns and drivers of the diazotrophic community structure (abundance, diversity, composition, and inter-specific interactions) and N fixation potential (nifH mRNA copy number) along a 400-m elevational gradient in subalpine forests on the eastern edge of Tibetan Plateau, using droplet digital PCR, nifH gene sequencing, and metagenomic sequencing.

    Article Title: Interdependent RNA structural motifs at the 3ʹ-terminus of the West Nile virus genome regulate viral growth
    Article Snippet: .. The RNAs were then reverse transcribed (RT) with MarathonRT (RNAConnect), 2X MarathonRT buffer, (100 mM Tris-HCl pH 8.3, 400 mM KCl, 4 mM MgCl2, 10 mM DTT, 40% glycerol) and 0.5 mM dNTP (NEB, cat #N0447S). ..

    Article Title: Regulation of YAP activity by nuclear G-actin binding
    Article Snippet: .. RNA and primer were denatured in a 10 μL reaction with 1 μg total RNA, 2 μL Oligo d(T)23 VN (New England Biolabs, S1327S), 1 μL 10 mM dNTP (New England Biolabs, N0447S) for 5 min at 65°C, then cDNA synthesis was synthesized at 42°C for 1 h after adding 2.8 μL Nuclease-free H 2 O (New England Biolabs, B1500L), 4 μL 5X ProtoScript II Buffer, 2 μL 0.1M DTT (Roth, 6908.1), 0.2 μL RNase Inhibitor (40 U/μl) (New England Biolabs, M0307S) and 1 μL ProtoScript® II Reverse Transcriptase (New England Biolabs, M0368L). .. Quantitative PCR (qPCR) for gene expression and CHIP-qPCR analysis was performed in a 20-μl reaction mixture containing 2 μl cDNA or recovered DNA from CHIP, 200 nM primers, and 10 μl GoTaq® qPCR Master Mix (2X) (Promega, A6002).

    cDNA Synthesis:

    Article Title: Regulation of YAP activity by nuclear G-actin binding.
    Article Snippet: .. RNA and primer were denatured in a 10 μL reaction with 1 μg total RNA, 2 μL Oligo d(T)23 VN (New England Biolabs, S1327S), 1 μL 10 mM dNTP (New England Biolabs, N0447S) for 5 min a h o D E T P w c 1 e c p C s p C q b t t i f S S T t u o o N h u T s g o i b m 1 a a c ( e t r w 8 t i s t m 2 t a w D ow nloaded from https://academ ic.oup.com /nar/article/54/6/gkag248/8528807 by guest on 22 M arch 2026 t 65 ◦C, then cDNA synthesis was synthesized at 42 ◦C for 1 after adding 2.8 μL Nuclease-free H 2 O (New England Bilabs, B1500L), 4 μL 5X ProtoScript II Buffer, 2 μL 0.1M TT (Roth, 6908.1), 0.2 μL RNase Inhibitor (40 U/ μl) (New ngland Biolabs, M0307S) and 1 μL ProtoScript ® II Reverse ranscriptase (New England Biolabs, M0368L). .. Quantitative CR (qPCR) for gene expression and CHIP-qPCR analysis as performed in a 20- μl reaction mixture containing 2 μl DNA or recovered DNA from CHIP, 200 nM primers, and 0 μl GoTaq ® qPCR Master Mix (2X) (Promega, A6002).

    Article Title: Regulation of YAP activity by nuclear G-actin binding
    Article Snippet: .. RNA and primer were denatured in a 10 μL reaction with 1 μg total RNA, 2 μL Oligo d(T)23 VN (New England Biolabs, S1327S), 1 μL 10 mM dNTP (New England Biolabs, N0447S) for 5 min at 65°C, then cDNA synthesis was synthesized at 42°C for 1 h after adding 2.8 μL Nuclease-free H 2 O (New England Biolabs, B1500L), 4 μL 5X ProtoScript II Buffer, 2 μL 0.1M DTT (Roth, 6908.1), 0.2 μL RNase Inhibitor (40 U/μl) (New England Biolabs, M0307S) and 1 μL ProtoScript® II Reverse Transcriptase (New England Biolabs, M0368L). .. Quantitative PCR (qPCR) for gene expression and CHIP-qPCR analysis was performed in a 20-μl reaction mixture containing 2 μl cDNA or recovered DNA from CHIP, 200 nM primers, and 10 μl GoTaq® qPCR Master Mix (2X) (Promega, A6002).

    Hybridization:

    Article Title: sc-rDSeq: a robust and cost-effective full-length total RNA sequencing method for single cells reveals multilayered heterogeneity in drug-resistant lung cancer cells
    Article Snippet: .. After denaturation at 85°C for 2 min and hybridization at 60°C for 20 min, 5 μl of primer extension mix containing 1.8 U of DNA Polymerase (NEB, cat #M0537) and 0.3 mM dNTP (NEB, cat #N0446) in 1× isothermal amplification buffer (NEB, cat #B0537) was added, followed by incubation at 60°C for 60 min. ..

    Amplification:

    Article Title: sc-rDSeq: a robust and cost-effective full-length total RNA sequencing method for single cells reveals multilayered heterogeneity in drug-resistant lung cancer cells
    Article Snippet: .. After denaturation at 85°C for 2 min and hybridization at 60°C for 20 min, 5 μl of primer extension mix containing 1.8 U of DNA Polymerase (NEB, cat #M0537) and 0.3 mM dNTP (NEB, cat #N0446) in 1× isothermal amplification buffer (NEB, cat #B0537) was added, followed by incubation at 60°C for 60 min. ..

    Article Title: sc-rDSeq: a robust and cost-effective full-length total RNA sequencing method for single cells reveals multilayered heterogeneity in drug-resistant lung cancer cells
    Article Snippet: Each round consisted of primer loading, hybridization and extension, performed by the Biomek 4000 liquid handling robot (Beckman Coulter Life Sciences). .. In the first two rounds, acrydite hydrogels with 2.5× isothermal amplification buffer (NEB, cat #B0537) and 0.85 mM dNTP (NEB, cat #N0446) were distributed in a 384-well plate at 6 μl per well (~40 000 hydrogel beads). ..

    Incubation:

    Article Title: sc-rDSeq: a robust and cost-effective full-length total RNA sequencing method for single cells reveals multilayered heterogeneity in drug-resistant lung cancer cells
    Article Snippet: .. After denaturation at 85°C for 2 min and hybridization at 60°C for 20 min, 5 μl of primer extension mix containing 1.8 U of DNA Polymerase (NEB, cat #M0537) and 0.3 mM dNTP (NEB, cat #N0446) in 1× isothermal amplification buffer (NEB, cat #B0537) was added, followed by incubation at 60°C for 60 min. ..

    Plasmid Preparation:

    Article Title: Sequencing complete plasmids on Oxford Nanopore Technologies sequencers using R2C2 and Chopper
    Article Snippet: In short, the individual plasmids and plasmid pool were amplified with rolling circle amplification (RCA) using Phi29 polymerase (NEB) and random hexamer primers (Thermo). .. We performed 5 reactions for each plasmid and the pool using 100 ng of input each: [5 uL Phi29 Buffer (10X,NEB, M0269S), 1 uL Phi29 Polymerase(NEB, M0269S), 2.5 uL dNTP (10 mM;NEB N0447S), 2.5 uL Random hexamer primers (10 uM, Thermo, SO181), 10 uL plasmid (10ng/ul), 29 uL ultra-pure water]. ..

    Random Hexamer:

    Article Title: Sequencing complete plasmids on Oxford Nanopore Technologies sequencers using R2C2 and Chopper
    Article Snippet: In short, the individual plasmids and plasmid pool were amplified with rolling circle amplification (RCA) using Phi29 polymerase (NEB) and random hexamer primers (Thermo). .. We performed 5 reactions for each plasmid and the pool using 100 ng of input each: [5 uL Phi29 Buffer (10X,NEB, M0269S), 1 uL Phi29 Polymerase(NEB, M0269S), 2.5 uL dNTP (10 mM;NEB N0447S), 2.5 uL Random hexamer primers (10 uM, Thermo, SO181), 10 uL plasmid (10ng/ul), 29 uL ultra-pure water]. ..



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    Mutagenesis analysis of BtTdT variants. (a) L397 (green) or L397M (magenta) in BtTdT. (b) Activity test for M1. (c) R336/K338 in BtTdT (green) or R335/K337 in ZaTdT (orange). (d) Activity comparison of three BtTdT mutants. (e) Elongation by M3 with different iDNAs terminated with 16 dinucleotides and 4 types of 3′–ONH 2 –dNTPs. Reaction conditions: 1 mg/mL TdT, 1 μM iDNA, 42 °C, 10 min. “A∼, T∼, C∼, and G∼” stand for 3′–ONH 2 –dATP, 3′–ONH 2 –dTTP, 3′–ONH 2 –dCTP, and 3′–ONH 2 –dGTP, respectively. Note : Product bands at the same concentration may display different intensities due to sequence-specific effects.
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    Mutagenesis analysis of BtTdT variants. (a) L397 (green) or L397M (magenta) in BtTdT. (b) Activity test for M1. (c) R336/K338 in BtTdT (green) or R335/K337 in ZaTdT (orange). (d) Activity comparison of three BtTdT mutants. (e) Elongation by M3 with different iDNAs terminated with 16 dinucleotides and 4 types of 3′–ONH 2 –dNTPs. Reaction conditions: 1 mg/mL TdT, 1 μM iDNA, 42 °C, 10 min. “A∼, T∼, C∼, and G∼” stand for 3′–ONH 2 –dATP, 3′–ONH 2 –dTTP, 3′–ONH 2 –dCTP, and 3′–ONH 2 –dGTP, respectively. Note : Product bands at the same concentration may display different intensities due to sequence-specific effects.
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    Mutagenesis analysis of BtTdT variants. (a) L397 (green) or L397M (magenta) in BtTdT. (b) Activity test for M1. (c) R336/K338 in BtTdT (green) or R335/K337 in ZaTdT (orange). (d) Activity comparison of three BtTdT mutants. (e) Elongation by M3 with different iDNAs terminated with 16 dinucleotides and 4 types of 3′–ONH 2 –dNTPs. Reaction conditions: 1 mg/mL TdT, 1 μM iDNA, 42 °C, 10 min. “A∼, T∼, C∼, and G∼” stand for 3′–ONH 2 –dATP, 3′–ONH 2 –dTTP, 3′–ONH 2 –dCTP, and 3′–ONH 2 –dGTP, respectively. Note : Product bands at the same concentration may display different intensities due to sequence-specific effects.
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    Image Search Results


    Mutagenesis analysis of BtTdT variants. (a) L397 (green) or L397M (magenta) in BtTdT. (b) Activity test for M1. (c) R336/K338 in BtTdT (green) or R335/K337 in ZaTdT (orange). (d) Activity comparison of three BtTdT mutants. (e) Elongation by M3 with different iDNAs terminated with 16 dinucleotides and 4 types of 3′–ONH 2 –dNTPs. Reaction conditions: 1 mg/mL TdT, 1 μM iDNA, 42 °C, 10 min. “A∼, T∼, C∼, and G∼” stand for 3′–ONH 2 –dATP, 3′–ONH 2 –dTTP, 3′–ONH 2 –dCTP, and 3′–ONH 2 –dGTP, respectively. Note : Product bands at the same concentration may display different intensities due to sequence-specific effects.

    Journal: Synthetic and Systems Biotechnology

    Article Title: Semi-rational engineering of terminal deoxynucleotidyl transferase for high-efficiency enzymatic de novo DNA synthesis

    doi: 10.1016/j.synbio.2026.03.009

    Figure Lengend Snippet: Mutagenesis analysis of BtTdT variants. (a) L397 (green) or L397M (magenta) in BtTdT. (b) Activity test for M1. (c) R336/K338 in BtTdT (green) or R335/K337 in ZaTdT (orange). (d) Activity comparison of three BtTdT mutants. (e) Elongation by M3 with different iDNAs terminated with 16 dinucleotides and 4 types of 3′–ONH 2 –dNTPs. Reaction conditions: 1 mg/mL TdT, 1 μM iDNA, 42 °C, 10 min. “A∼, T∼, C∼, and G∼” stand for 3′–ONH 2 –dATP, 3′–ONH 2 –dTTP, 3′–ONH 2 –dCTP, and 3′–ONH 2 –dGTP, respectively. Note : Product bands at the same concentration may display different intensities due to sequence-specific effects.

    Article Snippet: 3′–ONH 2 –dNTPs were bought from Firebird Biomolecular Sciences (Florida, USA), and 3′- O –CH 2 N 3 –dNTP and 3′–OCHCHCN–dNTP were purchased from Huana Biomedical Technology Co. Ltd. (Hefei, China).

    Techniques: Mutagenesis, Activity Assay, Comparison, Concentration Assay, Sequencing

    Further mutational work based on M3. (a) Key amino acids at the catalytic center in BtTdT (green) and ZaTdT (cyan). (b) Activity evaluation for M3-based mutants. (c) Extension of 3′–ONH 2 –dATP by Bt15AA R336L/K338G/L397M/E456G . Reaction conditions: 1 mg/mL TdT, 1 μM iDNA, 42 °C, 10 min. Note : Product bands at the same concentration may display different intensities due to sequence-specific effects.

    Journal: Synthetic and Systems Biotechnology

    Article Title: Semi-rational engineering of terminal deoxynucleotidyl transferase for high-efficiency enzymatic de novo DNA synthesis

    doi: 10.1016/j.synbio.2026.03.009

    Figure Lengend Snippet: Further mutational work based on M3. (a) Key amino acids at the catalytic center in BtTdT (green) and ZaTdT (cyan). (b) Activity evaluation for M3-based mutants. (c) Extension of 3′–ONH 2 –dATP by Bt15AA R336L/K338G/L397M/E456G . Reaction conditions: 1 mg/mL TdT, 1 μM iDNA, 42 °C, 10 min. Note : Product bands at the same concentration may display different intensities due to sequence-specific effects.

    Article Snippet: 3′–ONH 2 –dNTPs were bought from Firebird Biomolecular Sciences (Florida, USA), and 3′- O –CH 2 N 3 –dNTP and 3′–OCHCHCN–dNTP were purchased from Huana Biomedical Technology Co. Ltd. (Hefei, China).

    Techniques: Activity Assay, Concentration Assay, Sequencing

    Mutagenesis based on AF3-based structural analysis. (a) Position of surrogate substrate ATP in M3 variants with an amino acid substitution at E456. Enzyme-ligand complexes were predicted using AF3. E456S (yellow), E456G (aquamarine), E456 (green), and E456A (magenta). (b) Activity test of M4 mutant after adding 3′–ONH 2 –dATP for different time. (c) Position of surrogate substrate ATP in M4 variants with an amino acid substitution at D395. The distances in angstrom from the substrate's 3′-end to the reference residues E456 or D395 (wild-type) are shown in different color for each mutant. Enzyme-ligand complexes were predicted using AF3. D395 (M4, yellow), D395G (white), and D395M (red). (d) Extension of 3′–ONH 2 –dNTP by M4 in 5 min. Reaction conditions: 1 mg/mL TdT and 1 μM iDNA. (e) Low-energy binding conformations of 3′–ONH 2 –dNTP in the WT and three E456 variants, along with their structural overlays. The distances between the 3′-O atom in the WT conformation and those in the mutant conformations are indicated. (f) The average distance between the substrate's O–NH 2 moiety and the geometric center of the WT and three E456 mutant backbones. (g) Time course assays of M4 mutations at D395. (h) Extension of 3′–ONH 2 –dNTP by M5 in 30 s. Reaction conditions: 1 mg/mL BtTdT and 1 μM iDNA. (i) PAGE analysis of the 10 steps of extension by M5. Extension conditions: 1 mg/mL M5, 1 μM iDNA P2, 1 min. “A∼, T∼, C∼, and G∼” stand for 3′–ONH 2 –dATP, 3′–ONH 2 –dTTP, 3′–ONH 2 –dCTP, and 3′–ONH 2 –dGTP, respectively. In panels (e) and (f), blue, purple, pink, and orange denote wild type, E456A, E456G, and E456S, respectively. Note : Product bands at the same concentration may display different intensities due to sequence-specific effects.

    Journal: Synthetic and Systems Biotechnology

    Article Title: Semi-rational engineering of terminal deoxynucleotidyl transferase for high-efficiency enzymatic de novo DNA synthesis

    doi: 10.1016/j.synbio.2026.03.009

    Figure Lengend Snippet: Mutagenesis based on AF3-based structural analysis. (a) Position of surrogate substrate ATP in M3 variants with an amino acid substitution at E456. Enzyme-ligand complexes were predicted using AF3. E456S (yellow), E456G (aquamarine), E456 (green), and E456A (magenta). (b) Activity test of M4 mutant after adding 3′–ONH 2 –dATP for different time. (c) Position of surrogate substrate ATP in M4 variants with an amino acid substitution at D395. The distances in angstrom from the substrate's 3′-end to the reference residues E456 or D395 (wild-type) are shown in different color for each mutant. Enzyme-ligand complexes were predicted using AF3. D395 (M4, yellow), D395G (white), and D395M (red). (d) Extension of 3′–ONH 2 –dNTP by M4 in 5 min. Reaction conditions: 1 mg/mL TdT and 1 μM iDNA. (e) Low-energy binding conformations of 3′–ONH 2 –dNTP in the WT and three E456 variants, along with their structural overlays. The distances between the 3′-O atom in the WT conformation and those in the mutant conformations are indicated. (f) The average distance between the substrate's O–NH 2 moiety and the geometric center of the WT and three E456 mutant backbones. (g) Time course assays of M4 mutations at D395. (h) Extension of 3′–ONH 2 –dNTP by M5 in 30 s. Reaction conditions: 1 mg/mL BtTdT and 1 μM iDNA. (i) PAGE analysis of the 10 steps of extension by M5. Extension conditions: 1 mg/mL M5, 1 μM iDNA P2, 1 min. “A∼, T∼, C∼, and G∼” stand for 3′–ONH 2 –dATP, 3′–ONH 2 –dTTP, 3′–ONH 2 –dCTP, and 3′–ONH 2 –dGTP, respectively. In panels (e) and (f), blue, purple, pink, and orange denote wild type, E456A, E456G, and E456S, respectively. Note : Product bands at the same concentration may display different intensities due to sequence-specific effects.

    Article Snippet: 3′–ONH 2 –dNTPs were bought from Firebird Biomolecular Sciences (Florida, USA), and 3′- O –CH 2 N 3 –dNTP and 3′–OCHCHCN–dNTP were purchased from Huana Biomedical Technology Co. Ltd. (Hefei, China).

    Techniques: Mutagenesis, Activity Assay, Binding Assay, Concentration Assay, Sequencing